Germplasm Home Page Search Box

 

①: Search germplasm by variety name in germplasm base information database which contain 126780 items, support Chinese and Chinese PinYin search. .

The chinese "粳" in the database used PinYin "geng", query input support regular expression.

 

②: Search and filtering germplasm by advanced phenotype query. see below.

 

③: Search and filtering germplasm by advanced genotype query. see below.

 

③: Search germplasm by submit a clone sequence. see below.


 

Search by Phenotype


This is one of the important function modules of the website used for screening of germplasm and samples. The query module be used in "Germplasm" and "Custom Genotyping" web page.

 

Step ①, select phenotypic traits from floating list. You can click the "add" button to increase the filter entries, or click 'trash icon' to delete trait entries.

 

Step ②, set the query logic conditions according to the phenotypic value range, and click "Confirm" button get filtered result in ③.

 

Step ③, click the "Num" will display all filtered variety base information of this row trait logic query in below tables.

 

Step ④, click "Use Filter" button will using all logic paradigm in this table, the final query result will show in "④", Click this "Num" will display all filtered variety in below tables.



 

Search by Genotype

 

This is one of the important function modules for screening germplasm by genotype.

 

Step ①: Select genotype source: Position GT, a single position variation genotyping base on SNP/InDel.  Locus GT, unified locus genotyping using all high cover sample. Verified GT, a position genotype that has been verified by experimental method.

 

Step ②: Select chromosome and Input the position,  or input Locus ID

 

Step ③: Select the corresponding genotype

 

Step ④: Click the "number" will display all filtered variety. Click "Use Filter" button will using all logic paradigm in this table.



Germplasm Search Result Table


①:  Click English variety name will go to a new page which display this germplasm detail base information and phenotype traits values; click the icon of DNA will jump to the genotype page of this germplasm.

 

②:  Click the sample will link to a new sample page which show this sample sequenced, mapping, SNP/InDel detail information and SNP/InDel distribute and component images.

 

③:  Select the row by click will display this row's sample geographical distribution in below Google Map model.



Search by Sequence


Search germplasm by submit the clone sequence:

 

①:  Input submiter's name and email, that can use for query submit history. Select reference genome and paste one clone sequence with FASTA faomat.

 

②:  Click the submit button, wait for 5 to 30 seconds, the datail results will be displayed below.

 

 

③:  In variation detail table, click the number of sample will display these sample and germplasm detail information.

 

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