Germplasm Home Page Search Box


: Search germplasm by variety name in germplasm base information database which contain 126780 items, support Chinese and Chinese PinYin search, ( Chinese "粳" in the database used PinYin "geng" ), support regular expression search.


②: Search and Filtering germplasm through advanced phenotype values logic query. see below.


: Search and Filtering germplasm through advanced genotuype logic query. see below.



Search by Phenotype


This is one of the important function modules of the website used for screening of germplasm and samples. The query module be used in "Germplasm" and "Custom Call Genotype" web page.


Step ①: Select phenotypic traits from floating list. You can click the "add" button to increase the filter entries, or click 'trash icon' to delete trait entries.


Step ②: Set the query logic conditions according to the phenotypic value range, and click "Confirm" button get filtered result in ③.


Step ③: Click the "Num" will display all filtered variety base information of this row trait logic query in below tables.


Step ④: Click "Use Filter" button will using all logic paradigm in this table, the final query result will show in "④", Click this "Num" will display all filtered variety in below tables.




Search by Genotype


This is one of the important function modules for screening germplasm by genotype.


Step ①: Select genotype source: Position GT, a single position variation genotyping base on SNP/InDel.  Locus GT, unified locus genotyping using all high cover sample. Verified GT, a position genotype that has been verified by experimental method.


Step ②: Select chromosome and Input the position,  or input Locus ID


Step ③: Select the corresponding genotype


Step ④: Click the "number" will display all filtered variety. Click "Use Filter" button will using all logic paradigm in this table.




Germplasm Search Result Table


①:  Click English variety name will go to a new page which display this germplasm detail base information and phenotype traits values; click the icon of DNA will jump to the genotype page of this germplasm.


②:  Click the sample will link to a new sample page which show this sample sequenced, mapping, SNP/InDel detail information and SNP/InDel distribute and component images.


③:  Select the row by click will display this row's sample geographical distribution in below Google Map model.

Created with the Personal Edition of HelpNDoc: Easy to use tool to create HTML Help files and Help web sites