Oryza Sativa (Rice) Home
Summary
Germplasm:
Germplasm: 128363
WGS Germplasm: 5136
WGS Sample: 5542
Phenotype:
Traits: 180
Values: 4495566
Genotype:
Locus: 202499
Locus Genotype: 2866205
Nip SNP: 14850931
Nip InDel: 2250804
KnownGene:
Named Symbols: 13530
Described Trait: 4710
Verified Alleles: 73
Population Sample:
Rice3k: 3030
MBK: 1161
HB950: 950
Japan174: 174
Reference Genome:
Japonica Nipponbare (Nip)
Indica ShuHui498 (R498)
RNA-Seq Datasets:
Tissue: 20
Stage: 45
Datasets: 175
News
April 20,2018
MBKbase v1.0 Online:
Molecular Breeding Knowledge Base (MBKbase) is a part of the Strategic Priority Research Program of CAS (class A) for "Molecular Module-based Designer Breeding Systems".
This is a integrated database which collected population next-generation sequencing, germplasm resources, phenotypic and various genomics data.
Our website provide both Locus Genotying and Custom Genotyping,the genotype and phenotype can be associated displayed.
May 02,2018
Add Search by Genotype:
In germplasm home page, a new function of germplasm search by genotype was be added, which provides three custom filtering method: Position GT, Locus GT and Verified GT. You can set the complex logic query options.
May 05,2018
Add HB950 Population:
950 low-coverage sequencing rice sample were added which come form WGAS paper "Genome-wide association study of flowering time and grain yield traits in a worldwide collection of rice germplasm." The low-coverage sample only used to query in germplasm home page.
Germplasm
  • Germplasm Search
  • Search By Phenotype
  • Search By Genotype
  • WGS Germplasm Browser
  • WGS Sample Detail
Phenotype
  • Trait Search
  • Category Browser
  • Valuse Distribution
Genotype
  • Search by Locus
  • Search by Germplasm
  • SNP/InDel Search
  • Locus Search
  • Variety Compare
KnownGene
  • Search by Symbol
  • Search by Name
  • Category Browser
  • Verified Alleles List
Population
  • Trunk Tree
  • Find Sample in Tree
  • SubTree Detail
  • Geographic Distribution
Tools
  • CustomGT
  • GBrowse
  • Blast
  • Submit