| Summary |
Germplasm:
Germplasm: 137769
WGS Germplasm: 6345
WGS Sample: 7038
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Phenotype:
Traits: 180
Values: 4495566
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Genotype:
Locus: 95325
Locus Genotype: 1980767
Nip SNP: 14850931
Nip InDel: 2250804
R498 SNP: 13278107
R498 InDel: 2387538
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KnownGene:
Named Gene: 13219
Described Trait: 4821
Verified Alleles: 91
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Reference Genome:
Japonica Nipponbare (Nip)
Indica ShuHui498 (R498)
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RNA-Seq Datasets:
Tissue: 20
Stage: 45
Datasets: 175
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About |
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MBKbase, molecular breeding knowledgebase is a part of the Strategic Priority Research Program of CAS (class A) for "Molecular Module-based Designer Breeding Systems".
This is a integrated database which collected population next-generation sequencing, germplasm resources, phenotypic and various genomics data.
Our website provide both Locus Genotying and Custom Genotyping,the genotype and phenotype can be associated displayed.
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| News |
May 22,2019 Top
MBKbase Update:
KnownGene have been updated, three WGS population data have been loaded to database, and a new phylogenetic tree including most of sample were generated, details see Population columns.
In tools menu, we replace GBrowse with JBrowse, and a new WebArray tools have been developed.
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Dec. 14,2018
SNP/InDel Update:
The SNP/InDel of R498-reference have been loaded database, the genome annotation of R498 and Nip have been updated to V3, and all unified loci genotyping data also been updated.
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Nov. 28,2018
Add More Function:
In tools menu, G2G-Map( and sequence download), query genotype by sequence are available; In CustomGT page, the genotyping of multi-loci combination query have been developed.
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June 01,2018
Add Submit Function:
In tools menu, Submit is available, You can submit a VCF sample and will generate an online report in real-time.
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May 02,2018
Add Search by Genotype:
In germplasm home page, a new function of germplasm search by genotype was be added, which provides three custom filtering method: Position GT, Locus GT and Verified GT. You can set the complex logic query options.
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